I spent this week reading through research protocol and sifting through other relevant documentation to get gain an understand of project. Note-making (on paper, not a pc!) seems to work best for me as a way of engaging with text over long periods of reading. I like to use flow/diagrams that show the development of my understandings of the content, with questions and quotations on the diagram periphery. The questions are useful to feedback to my line manager.
Below is a link to one of my diagrams: